PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1257s0090.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 643aa    MW: 72215.5 Da    PI: 7.2843
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1257s0090.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.31.2e-22129230199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++  +W++++i+r++++r++lt+GW+ Fv+a++L +g++v
  SapurV1A.1257s0090.2.p 129 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELIARDLHEVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGESV 213
                             99*****************************86555544..8********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             +F   ++++ +l+++++r+
  SapurV1A.1257s0090.2.p 214 LFI--WNEKNQLLLGIRRA 230
                             ***..8899999****997 PP

2Auxin_resp120.21.6e-39255338183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+v+YnPras+seFv++++k++ka+  ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  SapurV1A.1257s0090.2.p 255 AAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFhIRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 338
                             79*******************************98659*******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-48113258IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.9E-40122244IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-20128229No hitNo description
PfamPF023626.0E-21129230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.815129231IPR003340B3 DNA binding domain
SMARTSM010192.7E-23129231IPR003340B3 DNA binding domain
PfamPF065071.3E-34255338IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MKLSASGLGG QQAGQEGEKK CLNSELWHAC AGPLVSLPTV GSRVVYIPQG HSEQVAATTN  60
KEVDAHIPNY PSLPAQLICQ LHNVTMHADV ETDEVYAQMT LQPLTPQEQK ETFLPMDLGM  120
PSKQPTNYFC KTLTASDTST HGGFSVPRRA AEKVFPPLDF TQQPPAQELI ARDLHEVEWK  180
FRHIFRGQPK RHLLTTGWSV FVSAKRLVAG ESVLFIWNEK NQLLLGIRRA TRPQTVMPSS  240
VLSSDSMHIG LLAAAAHAAA TNSCFTVFYN PRASPSEFVI PLSKYVKAVF HIRVSVGMRF  300
RMLFETEESS VRRYMGTITG ISDLDPVRWP NSHWRSVKVG WDESTAGERQ PRVSLWEIEP  360
LTTFPMYPSL FPLRLKRPWH PGSSSFLDSR DEASNGLIWL KDGSGEQGLP SLNFQANMLP  420
WMQQRLDPTM LGNDHTQRYQ AILAAGMQKL GGGDPLRQQF MQLQQPFQYL QQSSSPNPLL  480
QLQQQHQAIQ QSISHNILQP QNQISTDSLP RHLLQQQLNN QPNDQPQQHQ HAYHDGLHIQ  540
TDQLQRQQSN LPSPSFSKTE YMESSPKFTV STTMQNMLGS VCTEGSGNLL DFTRASQSTL  600
TEQLPQQSWV PKYAHQEVNA FSNSLSHPRT YPEKDPSMEA EN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1631535943388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1479150.0EF147915.1 Populus trichocarpa clone WS0125_O23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038345.10.0PREDICTED: auxin response factor 8-like
SwissprotQ9FGV10.0ARFH_ARATH; Auxin response factor 8
TrEMBLU5FJ270.0U5FJ27_POPTR; Auxin response factor
STRINGPOPTR_0017s01870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0auxin response factor 8